Sys.Date()
#> [1] "2024-05-07"
BiocManager::version()
#> [1] '3.18'
BiocManager::valid()
#>
#> * sessionInfo()
#>
#> R version 4.3.3 (2024-02-29 ucrt)
#> Platform: x86_64-w64-mingw32/x64 (64-bit)
#> Running under: Windows 10 x64 (build 19045)
#>
#> Matrix products: default
#>
#>
#> locale:
#> [1] LC_COLLATE=Chinese (Simplified)_China.utf8
#> [2] LC_CTYPE=Chinese (Simplified)_China.utf8
#> [3] LC_MONETARY=Chinese (Simplified)_China.utf8
#> [4] LC_NUMERIC=C
#> [5] LC_TIME=Chinese (Simplified)_China.utf8
#>
#> time zone: Asia/Shanghai
#> tzcode source: internal
#>
#> attached base packages:
#> [1] stats graphics grDevices utils datasets methods base
#>
#> other attached packages:
#> [1] writexl_1.5.0 readxl_1.4.3 BiocManager_1.30.22
#> [4] patchwork_1.2.0 lubridate_1.9.3 forcats_1.0.0
#> [7] stringr_1.5.1 dplyr_1.1.4 purrr_1.0.2
#> [10] readr_2.1.5 tidyr_1.3.1 tibble_3.2.1
#> [13] ggplot2_3.5.1 tidyverse_2.0.0 conflicted_1.2.0
#>
#> loaded via a namespace (and not attached):
#> [1] utf8_1.2.4 generics_0.1.3 stringi_1.8.3 hms_1.1.3
#> [5] digest_0.6.35 magrittr_2.0.3 evaluate_0.23 grid_4.3.3
#> [9] timechange_0.3.0 fastmap_1.1.1 cellranger_1.1.0 jsonlite_1.8.8
#> [13] fansi_1.0.6 scales_1.3.0 cli_3.6.2 rlang_1.1.3
#> [17] munsell_0.5.1 yaml_2.3.8 withr_3.0.0 cachem_1.0.8
#> [21] tools_4.3.3 tzdb_0.4.0 memoise_2.0.1 colorspace_2.1-0
#> [25] vctrs_0.6.5 R6_2.5.1 lifecycle_1.0.4 htmlwidgets_1.6.4
#> [29] pkgconfig_2.0.3 pillar_1.9.0 gtable_0.3.5 glue_1.7.0
#> [33] xfun_0.43 tidyselect_1.2.1 rstudioapi_0.16.0 knitr_1.46
#> [37] htmltools_0.5.8.1 rmarkdown_2.26 compiler_4.3.3
#>
#> Bioconductor version '3.18'
#>
#> * 11 packages out-of-date
#> * 0 packages too new
#>
#> create a valid installation with
#>
#> BiocManager::install(c(
#> "apcluster", "BiocManager", "brio", "fs", "ggpp", "labelled", "ragg", "sp",
#> "stringi", "tinytex", "xopen"
#> ), update = TRUE, ask = FALSE, force = TRUE)
#>
#> more details: BiocManager::valid()$too_new, BiocManager::valid()$out_of_date
devtools::session_info()
#> ─ Session info ───────────────────────────────────────────────────────────────
#> setting value
#> version R version 4.3.3 (2024-02-29 ucrt)
#> os Windows 10 x64 (build 19045)
#> system x86_64, mingw32
#> ui RTerm
#> language en
#> collate Chinese (Simplified)_China.utf8
#> ctype Chinese (Simplified)_China.utf8
#> tz Asia/Shanghai
#> date 2024-05-07
#> pandoc 3.1.11 @ D:/RStudio/resources/app/bin/quarto/bin/tools/ (via rmarkdown)
#>
#> ─ Packages ───────────────────────────────────────────────────────────────────
#> package * version date (UTC) lib source
#> BiocManager * 1.30.22 2023-08-08 [1] CRAN (R 4.3.3)
#> cachem 1.0.8 2023-05-01 [1] CRAN (R 4.3.3)
#> cellranger 1.1.0 2016-07-27 [1] CRAN (R 4.3.3)
#> cli 3.6.2 2023-12-11 [1] CRAN (R 4.3.3)
#> colorspace 2.1-0 2023-01-23 [1] CRAN (R 4.3.3)
#> conflicted * 1.2.0 2023-02-01 [1] CRAN (R 4.3.3)
#> devtools 2.4.5 2022-10-11 [1] CRAN (R 4.3.3)
#> digest 0.6.35 2024-03-11 [1] CRAN (R 4.3.3)
#> dplyr * 1.1.4 2023-11-17 [1] CRAN (R 4.3.3)
#> ellipsis 0.3.2 2021-04-29 [1] CRAN (R 4.3.3)
#> evaluate 0.23 2023-11-01 [1] CRAN (R 4.3.3)
#> fansi 1.0.6 2023-12-08 [1] CRAN (R 4.3.3)
#> fastmap 1.1.1 2023-02-24 [1] CRAN (R 4.3.3)
#> forcats * 1.0.0 2023-01-29 [1] CRAN (R 4.3.3)
#> fs 1.6.3 2023-07-20 [1] CRAN (R 4.3.3)
#> generics 0.1.3 2022-07-05 [1] CRAN (R 4.3.3)
#> ggplot2 * 3.5.1 2024-04-23 [1] CRAN (R 4.3.3)
#> glue 1.7.0 2024-01-09 [1] CRAN (R 4.3.3)
#> gtable 0.3.5 2024-04-22 [1] CRAN (R 4.3.3)
#> hms 1.1.3 2023-03-21 [1] CRAN (R 4.3.3)
#> htmltools 0.5.8.1 2024-04-04 [1] CRAN (R 4.3.3)
#> htmlwidgets 1.6.4 2023-12-06 [1] CRAN (R 4.3.3)
#> httpuv 1.6.15 2024-03-26 [1] CRAN (R 4.3.3)
#> jsonlite 1.8.8 2023-12-04 [1] CRAN (R 4.3.3)
#> knitr 1.46 2024-04-06 [1] CRAN (R 4.3.3)
#> later 1.3.2 2023-12-06 [1] CRAN (R 4.3.3)
#> lifecycle 1.0.4 2023-11-07 [1] CRAN (R 4.3.3)
#> lubridate * 1.9.3 2023-09-27 [1] CRAN (R 4.3.3)
#> magrittr 2.0.3 2022-03-30 [1] CRAN (R 4.3.3)
#> memoise 2.0.1 2021-11-26 [1] CRAN (R 4.3.3)
#> mime 0.12 2021-09-28 [1] CRAN (R 4.3.1)
#> miniUI 0.1.1.1 2018-05-18 [1] CRAN (R 4.3.3)
#> munsell 0.5.1 2024-04-01 [1] CRAN (R 4.3.3)
#> patchwork * 1.2.0 2024-01-08 [1] CRAN (R 4.3.3)
#> pillar 1.9.0 2023-03-22 [1] CRAN (R 4.3.3)
#> pkgbuild 1.4.4 2024-03-17 [1] CRAN (R 4.3.3)
#> pkgconfig 2.0.3 2019-09-22 [1] CRAN (R 4.3.3)
#> pkgload 1.3.4 2024-01-16 [1] CRAN (R 4.3.3)
#> profvis 0.3.8 2023-05-02 [1] CRAN (R 4.3.3)
#> promises 1.3.0 2024-04-05 [1] CRAN (R 4.3.3)
#> purrr * 1.0.2 2023-08-10 [1] CRAN (R 4.3.3)
#> R6 2.5.1 2021-08-19 [1] CRAN (R 4.3.3)
#> Rcpp 1.0.12 2024-01-09 [1] CRAN (R 4.3.3)
#> readr * 2.1.5 2024-01-10 [1] CRAN (R 4.3.3)
#> readxl * 1.4.3 2023-07-06 [1] CRAN (R 4.3.3)
#> remotes 2.5.0 2024-03-17 [1] CRAN (R 4.3.3)
#> rlang 1.1.3 2024-01-10 [1] CRAN (R 4.3.3)
#> rmarkdown 2.26 2024-03-05 [1] CRAN (R 4.3.3)
#> rstudioapi 0.16.0 2024-03-24 [1] CRAN (R 4.3.3)
#> scales 1.3.0 2023-11-28 [1] CRAN (R 4.3.3)
#> sessioninfo 1.2.2 2021-12-06 [1] CRAN (R 4.3.3)
#> shiny 1.8.1.1 2024-04-02 [1] CRAN (R 4.3.3)
#> stringi 1.8.3 2023-12-11 [1] CRAN (R 4.3.2)
#> stringr * 1.5.1 2023-11-14 [1] CRAN (R 4.3.3)
#> tibble * 3.2.1 2023-03-20 [1] CRAN (R 4.3.3)
#> tidyr * 1.3.1 2024-01-24 [1] CRAN (R 4.3.3)
#> tidyselect 1.2.1 2024-03-11 [1] CRAN (R 4.3.3)
#> tidyverse * 2.0.0 2023-02-22 [1] CRAN (R 4.3.3)
#> timechange 0.3.0 2024-01-18 [1] CRAN (R 4.3.3)
#> tzdb 0.4.0 2023-05-12 [1] CRAN (R 4.3.3)
#> urlchecker 1.0.1 2021-11-30 [1] CRAN (R 4.3.3)
#> usethis 2.2.3 2024-02-19 [1] CRAN (R 4.3.3)
#> utf8 1.2.4 2023-10-22 [1] CRAN (R 4.3.3)
#> vctrs 0.6.5 2023-12-01 [1] CRAN (R 4.3.3)
#> withr 3.0.0 2024-01-16 [1] CRAN (R 4.3.3)
#> writexl * 1.5.0 2024-02-09 [1] CRAN (R 4.3.3)
#> xfun 0.43 2024-03-25 [1] CRAN (R 4.3.3)
#> xtable 1.8-4 2019-04-21 [1] CRAN (R 4.3.3)
#> yaml 2.3.8 2023-12-11 [1] CRAN (R 4.3.2)
#>
#> [1] D:/R-4.3.3/library
#>
#> ──────────────────────────────────────────────────────────────────────────────